Fine-grained List-wise Alignment for Generative Medication Recommendation

Abstract

Accurate and safe medication recommendations are critical for effective clinical decision-making, especially in multimorbidity cases. However, existing systems rely on point-wise prediction paradigms that overlook synergistic drug effects and potential adverse drug-drug interactions (DDIs). We propose FLAME, a fine-grained list-wise alignment framework for large language models (LLMs), enabling drug-by-drug generation of drug lists. FLAME formulates recommendation as a sequential decision process, where each step adds or removes a single drug. To provide fine-grained learning signals, we devise step-wise Group Relative Policy Optimization (GRPO) with potential-based reward shaping, which explicitly models DDIs and optimizes the contribution of each drug to the overall prescription. Furthermore, FLAME enhances patient modeling by integrating structured clinical knowledge and collaborative information into the representation space of LLMs. Experiments on benchmark datasets demonstrate that FLAME achieves state-of-the-art performance, delivering superior accuracy, controllable safety–accuracy trade-offs, and strong generalization across diverse clinical scenarios. Our code is available at https://github.com/cxfann/Flame.

Publication
In NeurIPS 2025

Citation:

@article{fan2025fine,
  title={Fine-grained List-wise Alignment for Generative Medication Recommendation},
  author={Fan, Chenxiao and Gao, Chongming and Shi, Wentao and Gong, Yaxin and Zhao, Zihao and Feng, Fuli},
  journal={arXiv preprint arXiv:2505.20218},
  year={2025}
}
Chenxiao Fan
Chenxiao Fan
范晨晓
Chongming Gao
Chongming Gao
高崇铭 副研究员
Wentao Shi
Wentao Shi
石文焘
Zihao Zhao
Zihao Zhao
赵子豪
Fuli Feng
Fuli Feng
冯福利 教授